bioin.replication.minimum_skew¶

bioin.replication.minimum_skew(genome)[source]¶

Find a position in a genome where the skew diagram attains a minimum.

Parameters:	genome (str) – a DNA string genome.
Returns:	List, the position (integers i) where the minimum values (skew[i]) are in the skew array.

Examples

Taking a DNA string Genome as input and returning all integers i minimizing Skew[i] for Genome.

>>> genome = 'TAAAGACTGCCGAGAGGCCAACACGAGTGCTAGAACGAGGGGCGTAAACGCGGGTCCGAT'
>>> array_skew_min_position = minimum_skew(genome)
>>> array_skew_min_position = minimum_skew(genome)
>>> array_skew
    [11, 24]