bioin.motif.probability_with_pseudocount

bioin.motif.probability_with_pseudocount(text, motif_profile)

Calculate the probability of a string (i.e. text) given a motif profile matrix. With pseudocount.

Parameters:

• text (string) – a text string probability given the profile matrix.
• motif_profile (dict) – represent the probability of occurence of each nucleotide for each column.

Returns:

Float, the probability of text calculated from profile.