Index

A

approximate_pattern_count() (in module bioin.replication)

approximate_pattern_matching() (in module bioin.replication)

C

canvas() (in module bioin) complement() (in module bioin) consensus_motif() (in module bioin.motif)

consensus_with_pseudocount() (in module bioin.motif) count_motif() (in module bioin.motif) count_with_pseudocount() (in module bioin.motif)

F

faster_symbol_array() (in module bioin.replication)

frequency_map() (in module bioin) frequent_words() (in module bioin)

G

GibbsSampler() (in module bioin.motif)

greedy_motif_search() (in module bioin.motif) greedy_motif_search_with_pseudocount() (in module bioin.motif)

H

hamming_distance() (in module bioin.replication)

M

minimum_skew() (in module bioin.replication)

N

normalize_probability() (in module bioin.motif)

P

pattern_count() (in module bioin) pattern_matching() (in module bioin.replication) probability_profile() (in module bioin.motif) probability_with_pseudocount() (in module bioin.motif) profile_generated_string() (in module bioin.motif)

profile_most_probable_kmer() (in module bioin.motif) profile_most_probable_kmer_with_pseudocount() (in module bioin.motif) profile_motif() (in module bioin.motif) profile_probable_motifs() (in module bioin.motif) profile_with_pseudocount() (in module bioin.motif)

R

random_motifs() (in module bioin.motif) randomized_motif_search() (in module bioin.motif)

reverse() (in module bioin) reverse_complement() (in module bioin)

S

score_motif() (in module bioin.motif) score_with_pseudocount() (in module bioin.motif)

skew_array() (in module bioin.replication) symbol_array() (in module bioin.replication)

W

weighted_die() (in module bioin.motif)